In 2029, the future world is a world of high technology and information. The improvement of human living standards is accompanied by the high-tech nature of criminal activities. Therefore, a special force dedicated to suppressing high-tech crimes, Public Security Section 9, was established. Captain Motoko Kusanagi, as a female police officer with a "cyborg" body, leads Public Security Section 9 to carry out continuous operations. This time, Public Security Section 9 helped Public Security Section 6 secretly solve the troublesome trivialities of a programmer fleeing to another country, and was involved in the crime of the legendary hacker "Puppet Master". When the action was deadlocked, the Puppet Master unexpectedly showed up in Public Security Section 9 uninvited! Motoko and her comrades were unknowingly involved in a conspiracy involving the government. This work is adapted from the 1995 animated film "GHOSTINTHESHELL", which is a work with the same plot and completely remade pictures.